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| First Round Draft Pick History |
| 1 | 20 | 20 | 2018 | Annual Draft | SP | Jakob | Junis | MLB |
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| 1 | 15 | 15 | 2017 | Annual Draft | OF | Leody | Taveras | MIN |
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| 1 | 10 | 10 | 2016 | Annual Draft | SP | Jorge | Lopez | MLB |
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| 1 | 20 | 20 | 2015 | Annual Draft | SP | Shane | Greene | MLB |
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| 1 | 7 | 7 | 2014 | Annual Draft | C | Josmil | Pinto | MLB |
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| 1 | 11 | 11 | 2013 | Annual Draft | SP | Jose | Quintana | MLB |
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| 1 | 4 | 4 | 2011 | Annual Draft | SP | Jacob | Turner | MIN |
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| 1 | 11 | 11 | 2010 | Annual Draft | SP | Chris | Withrow | MIN |
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| Complete Draft History |
| 1 | 20 | 20 | 2018 | Annual Draft | SP | Jakob | Junis | MLB |
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| 2 | 19 | 47 | 2018 | Annual Draft | SS | Jeremy | Eierman | COL |
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| 3 | 5 | 61 | 2018 | Annual Draft | SP | Logan | Gilbert | COL |
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| 3 | 20 | 76 | 2018 | Annual Draft | C | Sean | Murphy | MIN |
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| 4 | 19 | 103 | 2018 | Annual Draft | OF | Daniel | Johnson | MIN |
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| 5 | 20 | 132 | 2018 | Annual Draft | SS | Isaac | Paredes | MIN |
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| 6 | 19 | 159 | 2018 | Annual Draft | SP | Luis | Medina | MIN |
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| 7 | 17 | 185 | 2018 | Annual Draft | SP | Carter | Stewart | HS |
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| 8 | 7 | 203 | 2018 | Annual Draft | RP | Chris | Hatcher | MLB |
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| 9 | 8 | 232 | 2018 | Annual Draft | OF | Lolo | Sanchez | MIN |
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| 11 | 20 | 300 | 2018 | Annual Draft | SP | Michael | Mercado | MIN |
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| 12 | 19 | 327 | 2018 | Annual Draft | OF | LaMonte | Wade | MIN |
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| 13 | 20 | 356 | 2018 | Annual Draft | RP | Buddy | Baumann | MLB |
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| 14 | 19 | 383 | 2018 | Annual Draft | SS | Leonardo | Rivas | MIN |
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| 15 | 20 | 412 | 2018 | Annual Draft | SP | Austin | Becker | HS |
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| 16 | 19 | 439 | 2018 | Annual Draft | RP | Tim | Mayza | MLB |
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| 17 | 20 | 468 | 2018 | Annual Draft | OF | Shane | Robinson | MLB |
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| 18 | 19 | 495 | 2018 | Annual Draft | OF | Carlos | Moncrief | MLB |
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| 1 | 15 | 15 | 2017 | Annual Draft | OF | Leody | Taveras | MIN |
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| 2 | 15 | 43 | 2017 | Annual Draft | SP | Brandon | Woodruff | MIN |
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| 3 | 15 | 71 | 2017 | Annual Draft | OF+ | Adam | Frazier | MLB |
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| 4 | 10 | 94 | 2017 | Annual Draft | RP | Matt | Bowman | MLB |
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| 4 | 15 | 99 | 2017 | Annual Draft | C | Tomas | Nido | MIN |
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| 5 | 15 | 127 | 2017 | Annual Draft | SP | T.J. | Zeuch | MIN |
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| 6 | 15 | 155 | 2017 | Annual Draft | SP | Patrick | Weigel | MIN |
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| 7 | 15 | 183 | 2017 | Annual Draft | SP | Blayne | Enlow | HS |
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| 8 | 15 | 211 | 2017 | Annual Draft | RP | James | Hoyt | MLB |
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| 9 | 15 | 239 | 2017 | Annual Draft | RP | Johnny | Barbato | MLB |
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| 11 | 15 | 295 | 2017 | Annual Draft | C | Tony | Cruz | MLB |
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| 12 | 15 | 323 | 2017 | Annual Draft | SP | Mitchell | White | MIN |
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| 13 | 15 | 351 | 2017 | Annual Draft | RP | Jayson | Aquino | MLB |
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| 14 | 15 | 379 | 2017 | Annual Draft | OF | Calvin | Mitchell | HS |
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| 15 | 15 | 407 | 2017 | Annual Draft | RP | Matt | Grace | MLB |
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| 16 | 15 | 435 | 2017 | Annual Draft | RP | Louis | Coleman | MLB |
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| 17 | 15 | 463 | 2017 | Annual Draft | RP | Matt | Dermody | MLB |
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| 18 | 15 | 491 | 2017 | Annual Draft | RP | Buddy | Baumann | MLB |
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| 19 | 15 | 519 | 2017 | Annual Draft | RP | Damien | Magnifico | MLB |
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| 1 | 10 | 10 | 2016 | Annual Draft | SP | Jorge | Lopez | MLB |
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| 2 | 10 | 38 | 2016 | Annual Draft | 1B | Cody | Bellinger | MIN |
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| 4 | 10 | 94 | 2016 | Annual Draft | OF | Jarrett | Parker | MLB |
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| 5 | 10 | 122 | 2016 | Annual Draft | OF | Socrates | Brito | MLB |
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| 6 | 10 | 150 | 2016 | Annual Draft | SP | Matt | Boyd | MLB |
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| 7 | 10 | 178 | 2016 | Annual Draft | SS | Wilkerman | Garcia | MIN |
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| 7 | 18 | 186 | 2016 | Annual Draft | SP | Albert | Abreu | MIN |
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| 7 | 27 | 195 | 2016 | Annual Draft | OF | Mickey | Moniak | HS |
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| 8 | 10 | 206 | 2016 | Annual Draft | SP | Junior | Fernandez | MIN |
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| 8 | 27 | 223 | 2016 | Annual Draft | SP | Sandy | Alcantara | MIN |
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| 9 | 10 | 234 | 2016 | Annual Draft | RP | Jairo | Diaz | MLB |
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| 9 | 26 | 250 | 2016 | Annual Draft | RP | Marcos | Mateo | MLB |
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| 9 | 27 | 251 | 2016 | Annual Draft | 2B | Yadiel | Rivera | MLB |
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| 10 | 10 | 262 | 2016 | Annual Draft | OF | Ryan | Cordell | MIN |
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| 11 | 10 | 290 | 2016 | Annual Draft | OF | Tyler | O'Neill | MIN |
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| 12 | 10 | 318 | 2016 | Annual Draft | SP | Eric | Lauer | COL |
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| 1 | 20 | 20 | 2015 | Annual Draft | SP | Shane | Greene | MLB |
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| 2 | 20 | 48 | 2015 | Annual Draft | SP | Spencer | Adams | MIN |
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| 3 | 9 | 65 | 2015 | Annual Draft | SS | Adrian | Rondon | MIN |
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| 3 | 20 | 76 | 2015 | Annual Draft | SP | Miguel | Castro | MIN |
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| 4 | 20 | 104 | 2015 | Annual Draft | RP | Jeff | Beliveau | MLB |
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| 5 | 20 | 132 | 2015 | Annual Draft | RP | Kirby | Yates | MLB |
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| 6 | 20 | 160 | 2015 | Annual Draft | SS | Ozhaino | Albies | MIN |
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| 6 | 26 | 166 | 2015 | Annual Draft | OF | Ian | Happ | COL |
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| 8 | 20 | 216 | 2015 | Annual Draft | OF | Michael | Yastrzemski | MIN |
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| 8 | 26 | 222 | 2015 | Annual Draft | RP | Brandon | Gomes | MLB |
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| 9 | 20 | 244 | 2015 | Annual Draft | RP | Jairo | Diaz | MLB |
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| 10 | 20 | 272 | 2015 | Annual Draft | OF | Kyle | Tucker | HS |
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| 11 | 20 | 300 | 2015 | Annual Draft | 1B | Rowdy | Tellez | MIN |
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| 12 | 20 | 328 | 2015 | Annual Draft | OF | Demi | Orimoloye | HS |
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| 1 | 7 | 7 | 2014 | Annual Draft | C | Josmil | Pinto | MLB |
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| 2 | 5 | 33 | 2014 | Annual Draft | SS | Rosell | Herrera | MIN |
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| 3 | 7 | 63 | 2014 | Annual Draft | SP | Miguel | Almonte | MIN |
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| 4 | 5 | 89 | 2014 | Annual Draft | 3B | Ryan | McMahon | MIN |
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| 6 | 5 | 145 | 2014 | Annual Draft | RP | Daniel | Webb | MLB |
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| 7 | 7 | 175 | 2014 | Annual Draft | RP | Neil | Wagner | MLB |
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| 8 | 5 | 201 | 2014 | Annual Draft | 3B | Zachary | Walters | MLB |
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| 8 | 6 | 202 | 2014 | Annual Draft | C | Antonio | Jimenez | MIN |
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| 10 | 5 | 257 | 2014 | Annual Draft | SP | Alexander | Reyes | MIN |
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| 11 | 7 | 287 | 2014 | Annual Draft | OF | Harold | Ramirez | MIN |
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| 12 | 5 | 313 | 2014 | Annual Draft | RP | Derek | Law | MIN |
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| 13 | 7 | 343 | 2014 | Annual Draft | SP | Chase | DeJong | MIN |
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| 14 | 5 | 369 | 2014 | Annual Draft | RP | Matt | Stites | MIN |
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| 1 | 11 | 11 | 2013 | Annual Draft | SP | Jose | Quintana | MLB |
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| 2 | 10 | 38 | 2013 | Annual Draft | OF | Clint | Frazier | HS |
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| 3 | 11 | 67 | 2013 | Annual Draft | RP | Christian | Garcia | MLB |
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| 4 | 10 | 94 | 2013 | Annual Draft | RP | Jim | Henderson | MLB |
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| 5 | 19 | 131 | 2013 | Annual Draft | 3B | Rio | Ruiz | MIN |
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| 6 | 14 | 154 | 2013 | Annual Draft | RP | Donnie | Veal | MLB |
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| 7 | 19 | 187 | 2013 | Annual Draft | 1B | Dominic | Smith | HS |
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| 8 | 1 | 197 | 2013 | Annual Draft | C | Alexander | Jackson | HS |
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| 9 | 11 | 235 | 2013 | Annual Draft | 3B | Tyler | Goeddel | MIN |
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| 10 | 10 | 262 | 2013 | Annual Draft | C | Michael | Perez | MIN |
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| 11 | 11 | 291 | 2013 | Annual Draft | C | Jonathan | Denney | HS |
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| 12 | 10 | 318 | 2013 | Annual Draft | OF | Gabriel | Guerrero | MIN |
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| 14 | 10 | 374 | 2013 | Annual Draft | RP | Jeff | Beliveau | MLB |
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| 15 | 11 | 403 | 2013 | Annual Draft | SP | Cody | Kukuk | MIN |
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| 2 | 2 | 30 | 2012 | Annual Draft | 3B | Javier | Baez | MIN |
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| 3 | 2 | 58 | 2012 | Annual Draft | SP | Noah | Syndergaard | MIN |
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| 4 | 2 | 86 | 2012 | Annual Draft | SP | Taylor | Guerrieri | MIN |
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| 5 | 2 | 114 | 2012 | Annual Draft | OF | Brandon | Guyer | MLB |
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| 5 | 17 | 129 | 2012 | Annual Draft | SS | Trevor | Story | MIN |
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| 6 | 2 | 142 | 2012 | Annual Draft | RP | Rafael | Dolis | MLB |
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| 7 | 2 | 170 | 2012 | Annual Draft | OF | Adron | Chambers | MLB |
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| 8 | 2 | 198 | 2012 | Annual Draft | RP | Marcos | Mateo | MLB |
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| 9 | 2 | 226 | 2012 | Annual Draft | C | Jose | Lobaton | MLB |
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| 10 | 2 | 254 | 2012 | Annual Draft | SP | Lucas | Sims | HS |
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| 11 | 2 | 282 | 2012 | Annual Draft | 3B | Jeimer | Candelario | MIN |
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| 11 | 5 | 285 | 2012 | Annual Draft | 2B | Eric | Farris | MLB |
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| 11 | 20 | 300 | 2012 | Annual Draft | SP | Hunter | Virant | HS |
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| 12 | 2 | 310 | 2012 | Annual Draft | OF | Courtney | Hawkins | HS |
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| 13 | 2 | 338 | 2012 | Annual Draft | SP | Kevin | Comer | MIN |
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| 14 | 2 | 366 | 2012 | Annual Draft | RP | Ryan | Cook | MLB |
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| 15 | 2 | 394 | 2012 | Annual Draft | OF | Marcus | Knecht | MIN |
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| 15 | 5 | 397 | 2012 | Annual Draft | 3B | Rosell | Herrera | MIN |
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| 1 | 4 | 4 | 2011 | Annual Draft | SP | Jacob | Turner | MIN |
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| 3 | 2 | 58 | 2011 | Annual Draft | P | Bill | Bray | MLB |
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| 3 | 4 | 60 | 2011 | Annual Draft | SS | Matthew | Lipka | MIN |
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| 6 | 2 | 142 | 2011 | Annual Draft | P | Fernando | Salas | MLB |
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| 7 | 2 | 170 | 2011 | Annual Draft | SP | Andrew | Brackman | MIN |
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| 8 | 2 | 198 | 2011 | Annual Draft | P | Pat | Neshek | MLB |
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| 9 | 2 | 226 | 2011 | Annual Draft | SP | Aaron | Sanchez | MIN |
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| 11 | 2 | 282 | 2011 | Annual Draft | P | Matt | Chico | MLB |
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| 12 | 2 | 310 | 2011 | Annual Draft | OF | Bubba | Starling | HS |
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| 13 | 2 | 338 | 2011 | Annual Draft | P | Romulo | Sanchez | MLB |
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| 14 | 2 | 366 | 2011 | Annual Draft | SP | Albert | Campos | MIN |
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| 15 | 2 | 394 | 2011 | Annual Draft | OF | Bryan | Petersen | MLB |
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| 1 | 11 | 11 | 2010 | Annual Draft | SP | Chris | Withrow | MIN |
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| 2 | 10 | 38 | 2010 | Annual Draft | 3B | Robert | Borchering | MIN |
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| 3 | 3 | 59 | 2010 | Annual Draft | SP | Arodys | Vizcaino | MIN |
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| 4 | 10 | 94 | 2010 | Annual Draft | OF | Reymond | Fuentes | MIN |
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| 4 | 25 | 109 | 2010 | Annual Draft | SS | Derrik | Gibson | MIN |
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| 5 | 11 | 123 | 2010 | Annual Draft | 1B | Anthony | Rizzo | MIN |
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| 6 | 10 | 150 | 2010 | Annual Draft | SP | Randall | Delgado | MIN |
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| 7 | 4 | 172 | 2010 | Annual Draft | C | Christian | Bethancourt | MIN |
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| 7 | 11 | 179 | 2010 | Annual Draft | OF | Anthony | Gose | MIN |
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| 8 | 10 | 206 | 2010 | Annual Draft | 2B | Jean | Segura | MIN |
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| 9 | 11 | 235 | 2010 | Annual Draft | C | Lucas | Bailey | MIN |
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| 10 | 10 | 262 | 2010 | Annual Draft | 1B | Ryan | Wheeler | MIN |
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| 11 | 11 | 291 | 2010 | Annual Draft | OF | Rymer | Liriano | MIN |
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| 12 | 10 | 318 | 2010 | Annual Draft | SP | Cody | Scarpetta | MIN |
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| 13 | 11 | 347 | 2010 | Annual Draft | SP | Kevin | Gausman | HS |
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| 14 | 10 | 374 | 2010 | Annual Draft | SS | Justin | OConner | HS |
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| 15 | 11 | 403 | 2010 | Annual Draft | OF | Moises | Sierra | MIN |
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