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| First Round Draft Pick History |
| 1 | 6 | 6 | 2024 | Annual Draft | OF | Victor | Scott | MIN |
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| 1 | 9 | 9 | 2023 | Annual Draft | OF | Wyatt | Langford | COL |
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| 1 | 17 | 17 | 2022 | Annual Draft | 2B | Michael | Stefanic | MIN |
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| 1 | 22 | 22 | 2021 | Annual Draft | SP | Levi | Kelly | MIN |
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| 1 | 23 | 23 | 2020 | Annual Draft | P | Tyler | Duffey | MLB |
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| 1 | 19 | 19 | 2018 | Annual Draft | SP | Jorge | Guzman | MIN |
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| 1 | 5 | 5 | 2017 | Annual Draft | OF | Jeren | Kendall | COL |
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| 1 | 6 | 6 | 2016 | Annual Draft | SP | Tyler | Duffey | MLB |
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| 1 | 10 | 10 | 2015 | Annual Draft | SP | Steven | Matz | MIN |
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| 1 | 17 | 17 | 2014 | Annual Draft | SS | Chris | Owings | MLB |
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| 1 | 12 | 12 | 2012 | Annual Draft | SS | Xander | Bogaerts | MIN |
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| 1 | 11 | 11 | 2011 | Annual Draft | 1B | Paul | Goldschmidt | MIN |
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| 1 | 9 | 9 | 2010 | Annual Draft | C | Tony | Sanchez | MIN |
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| 1 | 28 | 28 | 2010 | Annual Draft | SS | Danny | Espinosa | MIN |
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| Complete Draft History |
| 1 | 6 | 6 | 2024 | Annual Draft | OF | Victor | Scott | MIN |
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| 2 | 7 | 35 | 2024 | Annual Draft | SP | Christian | Scott | MIN |
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| 3 | 6 | 62 | 2024 | Annual Draft | SP | Carlos | Rodriguez | MIN |
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| 4 | 7 | 91 | 2024 | Annual Draft | SP | Caden | Dana | MIN |
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| 5 | 6 | 118 | 2024 | Annual Draft | SP | Hayden | Birdsong | MIN |
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| 6 | 7 | 147 | 2024 | Annual Draft | P | Kody | Funderburk | MLB |
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| 7 | 6 | 174 | 2024 | Annual Draft | P | Joey | Estes | MLB |
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| 8 | 7 | 203 | 2024 | Annual Draft | 2B+ | Taylor | Motter | MLB |
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| 9 | 8 | 232 | 2024 | Annual Draft | SP | Trey | Yesavage | COL |
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| 10 | 7 | 259 | 2024 | Annual Draft | SP | Luke | Holman | COL |
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| 11 | 6 | 286 | 2024 | Annual Draft | OF | Colton | Ledbetter | MIN |
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| 12 | 7 | 315 | 2024 | Annual Draft | C | Cesar | Salazar | MLB |
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| 13 | 6 | 342 | 2024 | Annual Draft | C | Chadwick | Tromp | MLB |
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| 1 | 9 | 9 | 2023 | Annual Draft | OF | Wyatt | Langford | COL |
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| 2 | 9 | 37 | 2023 | Annual Draft | 2B+ | Michael | Massey | MLB |
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| 4 | 9 | 93 | 2023 | Annual Draft | C | Kyle | Teel | COL |
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| 5 | 9 | 121 | 2023 | Annual Draft | SP | Mason | Montgomery | MIN |
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| 5 | 27 | 139 | 2023 | Annual Draft | SP | Taylor | Dollard | MIN |
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| 6 | 9 | 149 | 2023 | Annual Draft | P | Louie | Varland | MLB |
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| 7 | 9 | 177 | 2023 | Annual Draft | 2B | Tyler | Black | MIN |
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| 8 | 9 | 205 | 2023 | Annual Draft | SP | Beck | Way | MIN |
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| 9 | 9 | 233 | 2023 | Annual Draft | P | Jonathan | Hernandez | MLB |
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| 10 | 28 | 280 | 2023 | Annual Draft | 1B | Xavier | Isaac | MIN |
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| 11 | 9 | 289 | 2023 | Annual Draft | C | Meibrys | Viloria | MLB |
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| 12 | 9 | 317 | 2023 | Annual Draft | OF | Travis | Honeyman | COL |
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| 13 | 9 | 345 | 2023 | Annual Draft | SS+ | Erik | Gonzalez | MLB |
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| 14 | 9 | 373 | 2023 | Annual Draft | SP | Sem | Robberse | MIN |
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| 15 | 9 | 401 | 2023 | Annual Draft | P | Victor | Arano | MLB |
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| 16 | 9 | 429 | 2023 | Annual Draft | P | Michael | Plassmeyer | MLB |
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| 1 | 17 | 17 | 2022 | Annual Draft | 2B | Michael | Stefanic | MIN |
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| 2 | 17 | 45 | 2022 | Annual Draft | SP | Peyton | Battenfield | MIN |
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| 3 | 17 | 73 | 2022 | Annual Draft | 3B+ | Yonny | Hernandez | MLB |
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| 4 | 17 | 101 | 2022 | Annual Draft | SP | Blade | Tidwell | COL |
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| 5 | 17 | 129 | 2022 | Annual Draft | OF | Derek | Hill | MLB |
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| 6 | 17 | 157 | 2022 | Annual Draft | C | Yohel | Pozo | MLB |
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| 7 | 17 | 185 | 2022 | Annual Draft | 2B+ | Ernie | Clement | MLB |
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| 8 | 21 | 217 | 2022 | Annual Draft | P | Sammy | Long | MLB |
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| 8 | 24 | 220 | 2022 | Annual Draft | OF | Esteury | Ruiz | MIN |
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| 9 | 17 | 241 | 2022 | Annual Draft | OF | Brayan | Buelvas | MIN |
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| 10 | 17 | 269 | 2022 | Annual Draft | SS | Ezequiel | Tovar | MIN |
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| 10 | 27 | 279 | 2022 | Annual Draft | C+ | Patrick | Mazeika | MLB |
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| 11 | 17 | 297 | 2022 | Annual Draft | SP | Shawn | Dubin | MIN |
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| 12 | 17 | 325 | 2022 | Annual Draft | P | Cody | Poteet | MLB |
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| 13 | 17 | 353 | 2022 | Annual Draft | SP | Andrew | Abbott | MIN |
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| 1 | 22 | 22 | 2021 | Annual Draft | SP | Levi | Kelly | MIN |
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| 2 | 22 | 50 | 2021 | Annual Draft | P | Ljay | Newsome | MLB |
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| 4 | 22 | 106 | 2021 | Annual Draft | P | Brandon | Bielak | MLB |
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| 5 | 22 | 134 | 2021 | Annual Draft | 3B+ | Erick | Mejia | MLB |
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| 6 | 22 | 162 | 2021 | Annual Draft | P | Joey | Gerber | MLB |
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| 7 | 22 | 190 | 2021 | Annual Draft | C | Ali | Sanchez | MLB |
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| 8 | 3 | 199 | 2021 | Annual Draft | OF | Luis | Barrera | MIN |
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| 8 | 7 | 203 | 2021 | Annual Draft | P | Ramon | Rosso | MLB |
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| 8 | 22 | 218 | 2021 | Annual Draft | 3B | Colson | Montgomery | HS |
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| 9 | 22 | 246 | 2021 | Annual Draft | P | Cam | Hill | MLB |
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| 10 | 22 | 274 | 2021 | Annual Draft | SS+ | Yadiel | Rivera | MLB |
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| 11 | 22 | 302 | 2021 | Annual Draft | P | Brandon | Leibrandt | MLB |
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| 1 | 23 | 23 | 2020 | Annual Draft | P | Tyler | Duffey | MLB |
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| 2 | 23 | 51 | 2020 | Annual Draft | P | Casey | Sadler | MLB |
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| 4 | 23 | 107 | 2020 | Annual Draft | OF | Jarren | Duran | MIN |
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| 5 | 23 | 135 | 2020 | Annual Draft | P | Jimmy | Cordero | MLB |
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| 6 | 23 | 163 | 2020 | Annual Draft | SP | Noah | Song | MIN |
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| 7 | 23 | 191 | 2020 | Annual Draft | SS | Will | Wilson | MIN |
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| 8 | 23 | 219 | 2020 | Annual Draft | P | Ryan | Weber | MLB |
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| 10 | 23 | 275 | 2020 | Annual Draft | C | Gabriel | Moreno | MIN |
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| 11 | 23 | 303 | 2020 | Annual Draft | SP | Bobby | Miller | COL |
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| 12 | 23 | 331 | 2020 | Annual Draft | C | Raudy | Read | MLB |
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| 13 | 23 | 359 | 2020 | Annual Draft | P | Jason | Adam | MLB |
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| 14 | 23 | 387 | 2020 | Annual Draft | SP | Parker | Dunshee | MIN |
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| 15 | 23 | 415 | 2020 | Annual Draft | SP | Josh | Winckowski | MIN |
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| 16 | 23 | 443 | 2020 | Annual Draft | P | Fernando | Abad | MLB |
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| 3 | 21 | 77 | 2019 | Annual Draft | RP | Robert | Stock | MLB |
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| 4 | 21 | 105 | 2019 | Annual Draft | RP | Hansel | Robles | MLB |
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| 6 | 21 | 161 | 2019 | Annual Draft | SP | Simeon | Woods-Richardson | MIN |
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| 7 | 21 | 189 | 2019 | Annual Draft | SP | Jordan | Yamamoto | MIN |
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| 8 | 21 | 217 | 2019 | Annual Draft | SP | Aaron | Ashby | MIN |
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| 9 | 21 | 245 | 2019 | Annual Draft | SP | Gregory | Santos | MIN |
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| 10 | 21 | 273 | 2019 | Annual Draft | OF | Alek | Thomas | MIN |
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| 11 | 21 | 301 | 2019 | Annual Draft | SP | Josiah | Gray | MIN |
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| 12 | 21 | 329 | 2019 | Annual Draft | SS+ | Abiatal | Avelino | MLB |
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| 13 | 21 | 357 | 2019 | Annual Draft | 2B | Andy | Young | MIN |
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| 14 | 21 | 385 | 2019 | Annual Draft | RP | Dakota | Mekkes | MIN |
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| 15 | 21 | 413 | 2019 | Annual Draft | OF | Dominique | Thompson-Williams | MIN |
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| 16 | 21 | 441 | 2019 | Annual Draft | C | Dan | Butler | MLB |
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| 1 | 19 | 19 | 2018 | Annual Draft | SP | Jorge | Guzman | MIN |
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| 2 | 20 | 48 | 2018 | Annual Draft | SP | Shane | Bieber | MIN |
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| 3 | 17 | 73 | 2018 | Annual Draft | SP | Merandy | Gonzalez | MIN |
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| 3 | 19 | 75 | 2018 | Annual Draft | OF | Jose | Siri | MIN |
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| 4 | 20 | 104 | 2018 | Annual Draft | SP | Jen-Ho | Tseng | MLB |
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| 5 | 19 | 131 | 2018 | Annual Draft | C | Raudy | Read | MLB |
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| 6 | 20 | 160 | 2018 | Annual Draft | 2B | Joseph | Rosa | MIN |
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| 7 | 19 | 187 | 2018 | Annual Draft | SP | Artie | Lewicki | MLB |
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| 8 | 20 | 216 | 2018 | Annual Draft | SP | Ryan | Helsley | MIN |
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| 9 | 19 | 243 | 2018 | Annual Draft | SP | Aaron | Civale | MIN |
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| 10 | 20 | 272 | 2018 | Annual Draft | SP | Aaron | Wilkerson | MLB |
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| 11 | 19 | 299 | 2018 | Annual Draft | OF | Rafael | Bautista | MLB |
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| 12 | 20 | 328 | 2018 | Annual Draft | SP | Jose | Lopez | MIN |
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| 1 | 5 | 5 | 2017 | Annual Draft | OF | Jeren | Kendall | COL |
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| 2 | 21 | 49 | 2017 | Annual Draft | SP | Daniel | Mengden | MLB |
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| 3 | 21 | 77 | 2017 | Annual Draft | SP | Taylor | Clarke | MIN |
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| 4 | 21 | 105 | 2017 | Annual Draft | SP | Dillon | Peters | MIN |
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| 5 | 21 | 133 | 2017 | Annual Draft | SP | Nate | Smith | MIN |
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| 6 | 11 | 151 | 2017 | Annual Draft | SP | Andrew | Moore | MIN |
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| 6 | 21 | 161 | 2017 | Annual Draft | SP | Max | Povse | MIN |
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| 7 | 21 | 189 | 2017 | Annual Draft | SS | Jasrado | Chisholm | MIN |
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| 8 | 21 | 217 | 2017 | Annual Draft | 2B+ | Juniel | Querecuto | MLB |
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| 8 | 27 | 223 | 2017 | Annual Draft | C | Josmil | Pinto | MLB |
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| 9 | 21 | 245 | 2017 | Annual Draft | SP | Felix | Jorge | MIN |
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| 10 | 21 | 273 | 2017 | Annual Draft | SP | Chris | Rodriguez | MIN |
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| 11 | 21 | 301 | 2017 | Annual Draft | C+ | Rafael | Lopez | MLB |
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| 12 | 21 | 329 | 2017 | Annual Draft | SP | Sal | Romano | MIN |
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| 1 | 6 | 6 | 2016 | Annual Draft | SP | Tyler | Duffey | MLB |
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| 2 | 7 | 35 | 2016 | Annual Draft | C | Willson | Contreras | MIN |
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| 3 | 6 | 62 | 2016 | Annual Draft | OF | Stone | Garrett | MIN |
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| 4 | 7 | 91 | 2016 | Annual Draft | RP | Trevor | Gott | MLB |
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| 5 | 6 | 118 | 2016 | Annual Draft | SP | Christopher | Lee | MIN |
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| 6 | 7 | 147 | 2016 | Annual Draft | SP | Alec | Mills | MIN |
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| 7 | 6 | 174 | 2016 | Annual Draft | SS | Richard | Urena | MIN |
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| 7 | 28 | 196 | 2016 | Annual Draft | C | Oscar | Hernandez | MLB |
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| 8 | 6 | 202 | 2016 | Annual Draft | SP | Oscar | De La Cruz | MIN |
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| 8 | 7 | 203 | 2016 | Annual Draft | SP | Juan | Hillman | MIN |
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| 9 | 6 | 230 | 2016 | Annual Draft | RP | Giovanni | Soto | MLB |
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| 10 | 7 | 259 | 2016 | Annual Draft | C | Carson | Blair | MLB |
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| 11 | 6 | 286 | 2016 | Annual Draft | OF | Ramon | Flores | MLB |
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| 12 | 7 | 315 | 2016 | Annual Draft | RP | Andrew | McKirahan | MLB |
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| 13 | 6 | 342 | 2016 | Annual Draft | RP | Cory | Gearrin | MLB |
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| 14 | 7 | 371 | 2016 | Annual Draft | RP | Ryan | Dull | MLB |
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| 15 | 6 | 398 | 2016 | Annual Draft | RP | Matt | Grace | MLB |
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| 1 | 10 | 10 | 2015 | Annual Draft | SP | Steven | Matz | MIN |
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| 2 | 10 | 38 | 2015 | Annual Draft | SP | Nick | Martinez | MLB |
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| 3 | 10 | 66 | 2015 | Annual Draft | 3B | Giovanny | Urshela | MIN |
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| 4 | 10 | 94 | 2015 | Annual Draft | SP | Chase | Whitley | MLB |
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| 5 | 10 | 122 | 2015 | Annual Draft | SP | Kyle | Lobstein | MLB |
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| 6 | 10 | 150 | 2015 | Annual Draft | OF | Elian | Herrera | MLB |
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| 8 | 10 | 206 | 2015 | Annual Draft | RP | Jake | Buchanan | MLB |
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| 9 | 10 | 234 | 2015 | Annual Draft | SP | Tyler | Wagner | MIN |
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| 10 | 10 | 262 | 2015 | Annual Draft | SP | Alec | Grosser | MIN |
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| 11 | 10 | 290 | 2015 | Annual Draft | 1B | Joe | McCarthy | COL |
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| 12 | 10 | 318 | 2015 | Annual Draft | SP | Kendry | Flores | MIN |
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| 13 | 10 | 346 | 2015 | Annual Draft | C | Ali | Solis | MLB |
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| 14 | 10 | 374 | 2015 | Annual Draft | OF | Kyle | Wren | MIN |
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| 15 | 10 | 402 | 2015 | Annual Draft | C | Deivi | Grullon | MIN |
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| 1 | 17 | 17 | 2014 | Annual Draft | SS | Chris | Owings | MLB |
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| 2 | 16 | 44 | 2014 | Annual Draft | 2B | Devon | Travis | MIN |
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| 2 | 19 | 47 | 2014 | Annual Draft | OF | Mac | Williamson | MIN |
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| 3 | 17 | 73 | 2014 | Annual Draft | SP | Jason | Hursh | MIN |
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| 4 | 16 | 100 | 2014 | Annual Draft | SP | Adalberto | Mejia | MIN |
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| 5 | 17 | 129 | 2014 | Annual Draft | SP | Ty | Blach | MIN |
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| 6 | 16 | 156 | 2014 | Annual Draft | 2B | Hernan | Perez | MLB |
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| 6 | 27 | 167 | 2014 | Annual Draft | RP | Joseph | Ortiz | MLB |
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| 7 | 17 | 185 | 2014 | Annual Draft | RP | Steven | Ames | MLB |
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| 8 | 16 | 212 | 2014 | Annual Draft | OF | Matt | den Dekker | MLB |
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| 9 | 17 | 241 | 2014 | Annual Draft | C | Jackson | Reetz | HS |
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| 10 | 16 | 268 | 2014 | Annual Draft | 3B | Patrick | Kivlehan | MIN |
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| 11 | 17 | 297 | 2014 | Annual Draft | RP | Chen-Chang | Lee | MLB |
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| 12 | 16 | 324 | 2014 | Annual Draft | OF | Dylan | Davis | COL |
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| 13 | 17 | 353 | 2014 | Annual Draft | 1B | Erik | Castro | MIN |
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| 14 | 16 | 380 | 2014 | Annual Draft | SP | Sean | Reid-Foley | HS |
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| 2 | 8 | 36 | 2013 | Annual Draft | SP | J.R. | Graham | MIN |
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| 3 | 8 | 64 | 2013 | Annual Draft | SP | Brandon | Maurer | MIN |
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| 4 | 8 | 92 | 2013 | Annual Draft | C | Clint | Coulter | MIN |
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| 5 | 8 | 120 | 2013 | Annual Draft | SP | Samuel | Deduno | MLB |
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| 6 | 8 | 148 | 2013 | Annual Draft | OF | Alex | Castellanos | MLB |
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| 6 | 15 | 155 | 2013 | Annual Draft | 3B | Steven | Proscia | MIN |
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| 6 | 17 | 157 | 2013 | Annual Draft | RP | Kyle | Waldrop | MLB |
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| 7 | 8 | 176 | 2013 | Annual Draft | SP | Blake | Snell | MIN |
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| 8 | 8 | 204 | 2013 | Annual Draft | SP | P.J. | Walters | MLB |
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| 9 | 8 | 232 | 2013 | Annual Draft | OF | Anthony | Garcia | MIN |
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| 10 | 8 | 260 | 2013 | Annual Draft | 2B | Jose | Ramirez | MIN |
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| 11 | 8 | 288 | 2013 | Annual Draft | SP | Kohl | Stewart | HS |
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| 12 | 8 | 316 | 2013 | Annual Draft | SP | Nicholas | Struck | MIN |
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| 13 | 8 | 344 | 2013 | Annual Draft | SP | Roberto | Gomez | MIN |
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| 14 | 8 | 372 | 2013 | Annual Draft | SS | Christopher | Rivera | HS |
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| 15 | 8 | 400 | 2013 | Annual Draft | 1B | Jon | Griffin | MIN |
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| 1 | 12 | 12 | 2012 | Annual Draft | SS | Xander | Bogaerts | MIN |
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| 2 | 13 | 41 | 2012 | Annual Draft | SP | Nestor | Molina | MIN |
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| 2 | 21 | 49 | 2012 | Annual Draft | OF | Collin | Cowgill | MLB |
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| 3 | 12 | 68 | 2012 | Annual Draft | C | Jacob | Realmuto | MIN |
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| 3 | 21 | 77 | 2012 | Annual Draft | RP | Jose | Arredondo | MLB |
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| 4 | 13 | 97 | 2012 | Annual Draft | SS | Tyler | Saladino | MIN |
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| 4 | 21 | 105 | 2012 | Annual Draft | SP | Jonathan | Pettibone | MIN |
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| 5 | 12 | 124 | 2012 | Annual Draft | SP | Graham | Godfrey | MLB |
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| 6 | 13 | 153 | 2012 | Annual Draft | C | Anthony | Recker | MLB |
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| 7 | 12 | 180 | 2012 | Annual Draft | OF | Brian | Bixler | MLB |
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| 8 | 13 | 209 | 2012 | Annual Draft | 3B | Luis | Jimenez | MIN |
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| 9 | 12 | 236 | 2012 | Annual Draft | SP | D.J. | Mitchell | MIN |
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| 10 | 13 | 265 | 2012 | Annual Draft | SP | Austin | Hyatt | MIN |
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| 11 | 12 | 292 | 2012 | Annual Draft | SP | Erik | Arnesen | MIN |
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| 12 | 13 | 321 | 2012 | Annual Draft | SP | Brian | Flynn | MIN |
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| 13 | 12 | 348 | 2012 | Annual Draft | C | Hector | Gimenez | MLB |
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| 14 | 13 | 377 | 2012 | Annual Draft | 2B | Omar | Quintanilla | MLB |
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| 1 | 11 | 11 | 2011 | Annual Draft | 1B | Paul | Goldschmidt | MIN |
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| 2 | 11 | 39 | 2011 | Annual Draft | SP | Tommy | Milone | MIN |
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| 3 | 11 | 67 | 2011 | Annual Draft | P | Josh | Tomlin | MLB |
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| 4 | 11 | 95 | 2011 | Annual Draft | SP | Elih | Villanueva | MIN |
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| 5 | 23 | 135 | 2011 | Annual Draft | OF | Julio | Martinez | MIN |
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| 6 | 11 | 151 | 2011 | Annual Draft | C | Ryan | Lavarnway | MIN |
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| 7 | 11 | 179 | 2011 | Annual Draft | SP | Anthony | Vasquez | MIN |
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| 8 | 11 | 207 | 2011 | Annual Draft | OF | Brian | Cavazos-Galvez | MIN |
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| 8 | 25 | 221 | 2011 | Annual Draft | SS | Andrew | Romine | MLB |
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| 9 | 11 | 235 | 2011 | Annual Draft | 2B | Cody | Puckett | MIN |
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| 9 | 25 | 249 | 2011 | Annual Draft | C | Konrad | Schmidt | MLB |
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| 10 | 11 | 263 | 2011 | Annual Draft | SP | Adam | Wilk | MIN |
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| 11 | 14 | 294 | 2011 | Annual Draft | SP | Charlie | Furbush | MIN |
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| 12 | 11 | 319 | 2011 | Annual Draft | C | J.T. | Wise | MIN |
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| 12 | 15 | 323 | 2011 | Annual Draft | 1B | Clint | Robinson | MIN |
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| 13 | 11 | 347 | 2011 | Annual Draft | 3B | Aderlin | Rodriguez | MIN |
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| 14 | 11 | 375 | 2011 | Annual Draft | OF | Dan | Robertson | MIN |
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| 15 | 11 | 403 | 2011 | Annual Draft | SP | Charles | Brewer | MIN |
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| 1 | 9 | 9 | 2010 | Annual Draft | C | Tony | Sanchez | MIN |
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| 1 | 28 | 28 | 2010 | Annual Draft | SS | Danny | Espinosa | MIN |
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| 2 | 9 | 37 | 2010 | Annual Draft | OF | Grant | Desme | MIN |
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| 3 | 9 | 65 | 2010 | Annual Draft | SP | Trevor | Bell | MLB |
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| 4 | 9 | 93 | 2010 | Annual Draft | 3B | Brent | Morel | MIN |
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| 4 | 28 | 112 | 2010 | Annual Draft | SS | Diory | Hernandez | MLB |
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| 6 | 9 | 149 | 2010 | Annual Draft | OF | Craig | Gentry | MLB |
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| 7 | 9 | 177 | 2010 | Annual Draft | 1B | Mitch | Moreland | MIN |
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| 8 | 9 | 205 | 2010 | Annual Draft | C | Matt | Pagnozzi | MLB |
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| 8 | 21 | 217 | 2010 | Annual Draft | RP | Robert | Manuel | MLB |
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| 9 | 9 | 233 | 2010 | Annual Draft | SP | Michael | Belfiore | MIN |
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| 10 | 9 | 261 | 2010 | Annual Draft | SP | John | Ely | MIN |
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| 11 | 9 | 289 | 2010 | Annual Draft | OF | Jonathan | Gaston | MIN |
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| 12 | 9 | 317 | 2010 | Annual Draft | RP | Brad | Boxberger | COL |
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| 13 | 9 | 345 | 2010 | Annual Draft | RP | Jason | Waddell | MLB |
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| 14 | 9 | 373 | 2010 | Annual Draft | RP | Eduardo | Sanchez | MIN |
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| 15 | 9 | 401 | 2010 | Annual Draft | OF | TJ | Steele | MIN |
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| 2 | 6 | 34 | 2009 | Annual Draft | OF | Brett | Gardner | MLB |
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| 3 | 7 | 63 | 2009 | Annual Draft | 3B | David | Freese | MIN |
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| 4 | 6 | 90 | 2009 | Annual Draft | 2B | Chris | Getz | MLB |
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| 5 | 7 | 119 | 2009 | Annual Draft | RP | Burke | Badenhop | MLB |
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| 6 | 6 | 146 | 2009 | Annual Draft | SS | Eider | Torres | MLB |
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| 7 | 7 | 175 | 2009 | Annual Draft | SP | Justin | Cassel | MIN |
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| 8 | 21 | 217 | 2009 | Annual Draft | SP | Joseph | Martinez | MIN |
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| 9 | 21 | 245 | 2009 | Annual Draft | RP | Shawn | Camp | MLB |
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| 11 | 8 | 288 | 2009 | Annual Draft | SP | Bradley | Bergesen | MIN |
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| 12 | 8 | 316 | 2009 | Annual Draft | 2B | Steven | Tolleson | MIN |
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| 13 | 8 | 344 | 2009 | Annual Draft | P | Connor | Robertson | MLB |
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| 14 | 8 | 372 | 2009 | Annual Draft | SP | Ryne | Reynoso | MIN |
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| 15 | 8 | 400 | 2009 | Annual Draft | SP | Clayton | Tanner | MIN |
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